HL_9Q3R_059

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9Q3R|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_059 not in the Motif Atlas

Homologous match to HL_8B0X_086

Geometric discrepancy: 0.0317

The information below is about HL_8B0X_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q3R|1|A|U|2404
9Q3R|1|A|G|2405
9Q3R|1|A|A|2406
9Q3R|1|A|A|2407
9Q3R|1|A|U|2408
9Q3R|1|A|G|2409
9Q3R|1|A|G|2410
9Q3R|1|A|A|2411
9Q3R|1|A|A|2412
9Q3R|1|A|G|2413

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15