HL_9Q3R_086

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_086 not in the Motif Atlas

Homologous match to HL_8B0X_013

Geometric discrepancy: 0.0656

The information below is about HL_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27656.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9Q3R|1|a|G|617
9Q3R|1|a|C|618
9Q3R|1|a|U|619
9Q3R|1|a|C|620
9Q3R|1|a|A|621
9Q3R|1|a|A|622
9Q3R|1|a|C|623

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

Small ribosomal subunit protein bS16