HL_9Q87_047

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9Q87|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_047 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0477

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9Q87|1|a|A|382
9Q87|1|a|C|383
9Q87|1|a|A|384
9Q87|1|a|C|385
9Q87|1|a|G|386
9Q87|1|a|U|387
9Q87|1|a|G|388
9Q87|1|a|G|389
9Q87|1|a|U|390
9Q87|1|a|A|391
9Q87|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

A-site tRNA

Chain w

Large ribosomal subunit protein bL28