HL_9QEG_003
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QEG_003 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0936
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9QEG|1|8|G|32
9QEG|1|8|C|33
9QEG|1|8|U|34
9QEG|1|8|C|35
9QEG|1|8|A|36
9QEG|1|8|U|37
9QEG|1|8|A|38
9QEG|1|8|A|39
9QEG|1|8|C|40
Current chains
- Chain 8
- P-site tRNA molecule
Nearby chains
- Chain Aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ai
- Small ribosomal subunit protein uS9
- Chain d
- mRNA molecule
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