HL_9QEG_014

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

9QEG|1|A|A|372, 9QEG|1|A|A|373, 9QEG|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_014 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9QEG|1|A|G|370
9QEG|1|A|U|371
9QEG|1|A|A|372
9QEG|1|A|A|373
9QEG|1|A|U|374
9QEG|1|A|A|375
9QEG|1|A|A|376
9QEG|1|A|U|377
9QEG|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain S

Large ribosomal subunit protein uL24