HL_9QEG_028

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

9QEG|1|A|U|1002, 9QEG|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0555

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QEG|1|A|U|999
9QEG|1|A|G|1000
9QEG|1|A|A|1001
9QEG|1|A|U|1002
9QEG|1|A|A|1003
9QEG|1|A|A|1004
9QEG|1|A|G|1005
9QEG|1|A|G|1006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

Large ribosomal subunit protein uL16