HL_9QEG_046

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9QEG|1|A|A|2295, 9QEG|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_046 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0657

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9QEG|1|A|C|2291
9QEG|1|A|U|2292
9QEG|1|A|A|2293
9QEG|1|A|A|2294
9QEG|1|A|A|2295
9QEG|1|A|A|2296
9QEG|1|A|G|2297
9QEG|1|A|G|2298
9QEG|1|A|U|2299
9QEG|1|A|A|2300
9QEG|1|A|A|2301
9QEG|1|A|C|2302
9QEG|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16

Chain U

Large ribosomal subunit protein bL27