HL_9QEG_057

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9QEG|1|A|G|2778, 9QEG|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_057 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1028

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|C|2772
9QEG|1|A|U|2773
9QEG|1|A|G|2774
9QEG|1|A|A|2775
9QEG|1|A|A|2776
9QEG|1|A|A|2777
9QEG|1|A|G|2778
9QEG|1|A|C|2779
9QEG|1|A|A|2780
9QEG|1|A|U|2781
9QEG|1|A|C|2782
9QEG|1|A|U|2783
9QEG|1|A|A|2784
9QEG|1|A|A|2785
9QEG|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain H

Large ribosomal subunit protein uL13