HL_9QEG_064

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9QEG|1|Aa|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_064 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1099

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9QEG|1|Aa|G|267
9QEG|1|Aa|G|268
9QEG|1|Aa|U|269
9QEG|1|Aa|A|270
9QEG|1|Aa|A|271
9QEG|1|Aa|C|272
9QEG|1|Aa|G|273
9QEG|1|Aa|G|274
9QEG|1|Aa|C|275

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Aq

Small ribosomal subunit protein uS17

Chain At

Small ribosomal subunit protein bS20