HL_9QEG_066

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_066 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0646

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9QEG|1|Aa|A|328
9QEG|1|Aa|A|329
9QEG|1|Aa|C|330
9QEG|1|Aa|U|331
9QEG|1|Aa|G|332
9QEG|1|Aa|A|333
9QEG|1|Aa|G|334
9QEG|1|Aa|A|335
9QEG|1|Aa|C|336
9QEG|1|Aa|A|337
9QEG|1|Aa|C|338
9QEG|1|Aa|G|339
9QEG|1|Aa|G|340
9QEG|1|Aa|U|341

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

Small ribosomal subunit protein bS16

Chain At

Small ribosomal subunit protein bS20