HL_9QEG_088

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

9QEG|1|B|U|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_088 not in the Motif Atlas

Geometric match to HL_9DFE_006

Geometric discrepancy: 0.2709

The information below is about HL_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

9QEG|1|B|C|83
9QEG|1|B|U|84
9QEG|1|B|U|85
9QEG|1|B|A|86
9QEG|1|B|U|87
9QEG|1|B|G|88

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain K

Large ribosomal subunit protein uL16

Chain X

Large ribosomal subunit protein uL30