HL_9QIW_004

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9QIW|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_004 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.4341

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

9QIW|1|L5|U|204
9QIW|1|L5|C|205
9QIW|1|L5|U|206
9QIW|1|L5|G|207
9QIW|1|L5|A|208
9QIW|1|L5|U|209
9QIW|1|L5|C|210
9QIW|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32