HL_9QIW_004
3D structure
- PDB id
- 9QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 9QIW|1|L5|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QIW_004 not in the Motif Atlas
- Homologous match to HL_8P9A_117
- Geometric discrepancy: 0.4341
- The information below is about HL_8P9A_117
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_13999.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
9QIW|1|L5|U|204
9QIW|1|L5|C|205
9QIW|1|L5|U|206
9QIW|1|L5|G|207
9QIW|1|L5|A|208
9QIW|1|L5|U|209
9QIW|1|L5|C|210
9QIW|1|L5|G|211
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LY
- 60S ribosomal protein L26
- Chain Le
- 60S ribosomal protein L32
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