3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UCUGAUCG
Length
8 nucleotides
Bulged bases
9QIW|1|L5|C|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_004 not in the Motif Atlas
Homologous match to HL_8P9A_117
Geometric discrepancy: 0.4341
The information below is about HL_8P9A_117
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_13999.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
21

Unit IDs

9QIW|1|L5|U|204
9QIW|1|L5|C|205
9QIW|1|L5|U|206
9QIW|1|L5|G|207
9QIW|1|L5|A|208
9QIW|1|L5|U|209
9QIW|1|L5|C|210
9QIW|1|L5|G|211

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LY
60S ribosomal protein L26
Chain Le
60S ribosomal protein L32

Coloring options:


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