HL_9QIW_010

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_010 not in the Motif Atlas

Homologous match to HL_8CRE_011

Geometric discrepancy: 0.1185

The information below is about HL_8CRE_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9QIW|1|L5|U|393
9QIW|1|L5|G|394
9QIW|1|L5|A|395
9QIW|1|L5|A|396
9QIW|1|L5|G|397
9QIW|1|L5|A|398

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

GTP-binding protein 4

Chain LP

60S ribosomal protein L17