HL_9QIW_016
3D structure
- PDB id
- 9QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 9QIW|1|L5|A|1984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QIW_016 not in the Motif Atlas
- Homologous match to HL_8CRE_026
- Geometric discrepancy: 0.1991
- The information below is about HL_8CRE_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9QIW|1|L5|C|1978
9QIW|1|L5|A|1979
9QIW|1|L5|U|1980
9QIW|1|L5|G|1981
9QIW|1|L5|G|1982
9QIW|1|L5|A|1983
9QIW|1|L5|A|1984
9QIW|1|L5|G|1985
9QIW|1|L5|U|1986
9QIW|1|L5|C|1987
9QIW|1|L5|G|1988
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Nucleolar GTP-binding protein 2
- Chain CD
- GTP-binding protein 4
- Chain CF
- mRNA turnover protein 4 homolog
- Chain CG
- Notchless protein homolog 1
- Chain Lt
- Large ribosomal subunit protein uL11
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