HL_9QIW_023

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9QIW|1|L5|U|2530, 9QIW|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_023 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.1188

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9QIW|1|L5|G|2523
9QIW|1|L5|U|2524
9QIW|1|L5|U|2525
9QIW|1|L5|C|2526
9QIW|1|L5|A|2527
9QIW|1|L5|G|2528
9QIW|1|L5|A|2529
9QIW|1|L5|U|2530
9QIW|1|L5|C|2531
9QIW|1|L5|C|2532

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34