3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GUUCGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_027 not in the Motif Atlas
Homologous match to HL_8P9A_149
Geometric discrepancy: 0.4893
The information below is about HL_8P9A_149
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97067.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

9QIW|1|L5|G|2664
9QIW|1|L5|U|2665
9QIW|1|L5|U|2666
9QIW|1|L5|C|2667
9QIW|1|L5|G|2668
9QIW|1|L5|C|2669
9QIW|1|L5|C|2670

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain Lp
60S ribosomal protein L37a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0873 s