3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGAACAG
Length
7 nucleotides
Bulged bases
9QIW|1|L5|C|2814
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_030 not in the Motif Atlas
Homologous match to HL_8CRE_041
Geometric discrepancy: 0.5429
The information below is about HL_8CRE_041
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9QIW|1|L5|U|2810
9QIW|1|L5|G|2811
9QIW|1|L5|A|2812
9QIW|1|L5|A|2813
9QIW|1|L5|C|2814
9QIW|1|L5|A|2815
9QIW|1|L5|G|2816

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19

Coloring options:


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