3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GACAGAAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_034 not in the Motif Atlas
Homologous match to HL_8CRE_055
Geometric discrepancy: 0.2435
The information below is about HL_8CRE_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50860.2
Basepair signature
cWW-F-cWH-F-F-F-F
Number of instances in this motif group
6

Unit IDs

9QIW|1|L5|G|4250
9QIW|1|L5|A|4251
9QIW|1|L5|C|4252
9QIW|1|L5|A|4253
9QIW|1|L5|G|4254
9QIW|1|L5|A|4255
9QIW|1|L5|A|4256
9QIW|1|L5|A|4257
9QIW|1|L5|C|4258

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LJ
60S ribosomal protein L11

Coloring options:


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