HL_9QIW_038

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

9QIW|1|L5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_038 not in the Motif Atlas

Geometric match to HL_7JRT_001

Geometric discrepancy: 0.3791

The information below is about HL_7JRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36265.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9QIW|1|L5|U|4352
9QIW|1|L5|U|4353
9QIW|1|L5|U|4354
9QIW|1|L5|G|4355
9QIW|1|L5|G|4356
9QIW|1|L5|G|4357
9QIW|1|L5|U|4358
9QIW|1|L5|U|4359
9QIW|1|L5|U|4360
9QIW|1|L5|U|4361
9QIW|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36