HL_9QIW_046

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9QIW|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_046 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.1107

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9QIW|1|L5|G|4975
9QIW|1|L5|U|4976
9QIW|1|L5|A|4977
9QIW|1|L5|G|4978
9QIW|1|L5|A|4979
9QIW|1|L5|C|4980
9QIW|1|L5|G|4981
9QIW|1|L5|A|4982
9QIW|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31