HL_9QQA_013

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_013 not in the Motif Atlas

Geometric match to HL_8P9A_203

Geometric discrepancy: 0.1519

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|A|570
9QQA|1|A2|C|571
9QQA|1|A2|U|572
9QQA|1|A2|PSU|573
9QQA|1|A2|U|574
9QQA|1|A2|A|575
9QQA|1|A2|A|576
9QQA|1|A2|A2M|577
9QQA|1|A2|U|578
9QQA|1|A2|C|579
9QQA|1|A2|C|580
9QQA|1|A2|U|581
9QQA|1|A2|U|582

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24