HL_9QQA_018
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGGUGAAAU(PSU)
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQA_018 not in the Motif Atlas
- Geometric match to HL_8CRE_210
- Geometric discrepancy: 0.0957
- The information below is about HL_8CRE_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9QQA|1|A2|A|958
9QQA|1|A2|G|959
9QQA|1|A2|G|960
9QQA|1|A2|U|961
9QQA|1|A2|G|962
9QQA|1|A2|A|963
9QQA|1|A2|A|964
9QQA|1|A2|A|965
9QQA|1|A2|U|966
9QQA|1|A2|PSU|967
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Aa
- 40S ribosomal protein S3a
- Chain Ae
- Small ribosomal subunit protein uS7
- Chain An
- Small ribosomal subunit protein uS11
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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