HL_9QQA_032

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9QQA|1|A2|G|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_032 not in the Motif Atlas

Homologous match to HL_9H3G_107

Geometric discrepancy: 0.2733

The information below is about HL_9H3G_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|G|1659
9QQA|1|A2|U|1660
9QQA|1|A2|C|1661
9QQA|1|A2|A|1662
9QQA|1|A2|U|1663
9QQA|1|A2|A|1664
9QQA|1|A2|A|1665
9QQA|1|A2|G|1666
9QQA|1|A2|C|1667

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS14

Chain Ap

Small ribosomal subunit protein uS9

Chain As

40S ribosomal protein S19

Chain At

Small ribosomal subunit protein uS10