HL_9QQA_042

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9QQA|1|B5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_042 not in the Motif Atlas

Geometric match to HL_3VJR_001

Geometric discrepancy: 0.2668

The information below is about HL_3VJR_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9QQA|1|B5|U|204
9QQA|1|B5|C|205
9QQA|1|B5|U|206
9QQA|1|B5|G|207
9QQA|1|B5|A|208
9QQA|1|B5|U|209
9QQA|1|B5|C|210
9QQA|1|B5|G|211

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BY

Ribosomal protein L26

Chain Be

Ribosomal protein L32