HL_9QQA_045

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9QQA|1|B5|G|294, 9QQA|1|B5|A|295, 9QQA|1|B5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_045 not in the Motif Atlas

Geometric match to HL_8P9A_120

Geometric discrepancy: 0.1483

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9QQA|1|B5|C|289
9QQA|1|B5|U|290
9QQA|1|B5|U|291
9QQA|1|B5|G|292
9QQA|1|B5|G|293
9QQA|1|B5|G|294
9QQA|1|B5|A|295
9QQA|1|B5|A|296
9QQA|1|B5|U|297
9QQA|1|B5|G|298

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bo

Large ribosomal subunit protein eL42