HL_9QQA_059

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9QQA|1|B5|A|1585, 9QQA|1|B5|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_059 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.1172

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9QQA|1|B5|G|1582
9QQA|1|B5|C|1583
9QQA|1|B5|G|1584
9QQA|1|B5|A|1585
9QQA|1|B5|A|1586
9QQA|1|B5|A|1587
9QQA|1|B5|G|1588
9QQA|1|B5|A|1589
9QQA|1|B5|C|1590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37