HL_9QQA_065

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9QQA|1|B5|A|1923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_065 not in the Motif Atlas

Geometric match to HL_8CRE_026

Geometric discrepancy: 0.2702

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9QQA|1|B5|C|1917
9QQA|1|B5|A|1918
9QQA|1|B5|U|1919
9QQA|1|B5|G|1920
9QQA|1|B5|G|1921
9QQA|1|B5|A|1922
9QQA|1|B5|A|1923
9QQA|1|B5|G|1924
9QQA|1|B5|U|1925
9QQA|1|B5|C|1926
9QQA|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12