HL_9QQA_092

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9QQA|1|B5|G|3941

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_092 not in the Motif Atlas

Geometric match to HL_4V9F_055

Geometric discrepancy: 0.1062

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9QQA|1|B5|C|3939
9QQA|1|B5|U|3940
9QQA|1|B5|G|3941
9QQA|1|B5|OMG|3942
9QQA|1|B5|G|3943
9QQA|1|B5|G|3944
9QQA|1|B5|C|3945
9QQA|1|B5|G|3946
9QQA|1|B5|G|3947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29