HL_9QQA_097

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_097 not in the Motif Atlas

Geometric match to HL_8CRE_058

Geometric discrepancy: 0.096

The information below is about HL_8CRE_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9QQA|1|B5|U|4067
9QQA|1|B5|G|4068
9QQA|1|B5|A|4069
9QQA|1|B5|A|4070
9QQA|1|B5|A|4071
9QQA|1|B5|G|4072

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BT

60S ribosomal protein L21

Chain Bo

Large ribosomal subunit protein eL42