HL_9QQA_100

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9QQA|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_100 not in the Motif Atlas

Geometric match to HL_8P9A_173

Geometric discrepancy: 0.1545

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9QQA|1|B5|A|4220
9QQA|1|B5|G|4221
9QQA|1|B5|C|4222
9QQA|1|B5|A|4223
9QQA|1|B5|G|4224
9QQA|1|B5|A|4225
9QQA|1|B5|A|4226
9QQA|1|B5|U|4227

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein