HL_9QQB_005

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9QQB|1|A2|U|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_005 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.2096

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9QQB|1|A2|G|289
9QQB|1|A2|G|290
9QQB|1|A2|U|291
9QQB|1|A2|G|292
9QQB|1|A2|A|293
9QQB|1|A2|C|294
9QQB|1|A2|U|295
9QQB|1|A2|C|296

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ak

Small ribosomal subunit protein uS17