HL_9QQB_013

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_013 not in the Motif Atlas

Geometric match to HL_8P9A_203

Geometric discrepancy: 0.1522

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQB|1|A2|A|570
9QQB|1|A2|C|571
9QQB|1|A2|U|572
9QQB|1|A2|PSU|573
9QQB|1|A2|U|574
9QQB|1|A2|A|575
9QQB|1|A2|A|576
9QQB|1|A2|A2M|577
9QQB|1|A2|U|578
9QQB|1|A2|C|579
9QQB|1|A2|C|580
9QQB|1|A2|U|581
9QQB|1|A2|U|582

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24