HL_9QQB_015

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

9QQB|1|A2|G|822

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_015 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.1184

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9QQB|1|A2|U|821
9QQB|1|A2|G|822
9QQB|1|A2|PSU|823
9QQB|1|A2|U|824
9QQB|1|A2|C|825
9QQB|1|A2|A|826
9QQB|1|A2|A|827
9QQB|1|A2|A|828
9QQB|1|A2|G|829

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24