HL_9QQB_028

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

9QQB|1|A2|C|1420, 9QQB|1|A2|G|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_028 not in the Motif Atlas

Geometric match to HL_2PJP_001

Geometric discrepancy: 0.331

The information below is about HL_2PJP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.2

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QQB|1|A2|C|1418
9QQB|1|A2|C|1419
9QQB|1|A2|C|1420
9QQB|1|A2|G|1421
9QQB|1|A2|A|1422
9QQB|1|A2|G|1423

Current chains

Chain A2

18S rRNA

Nearby chains

Chain As

40S ribosomal protein S19