HL_9QQB_032

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9QQB|1|A2|A|1664, 9QQB|1|A2|G|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_032 not in the Motif Atlas

Geometric match to HL_8CRE_224

Geometric discrepancy: 0.3339

The information below is about HL_8CRE_224

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9QQB|1|A2|G|1659
9QQB|1|A2|U|1660
9QQB|1|A2|C|1661
9QQB|1|A2|A|1662
9QQB|1|A2|U|1663
9QQB|1|A2|A|1664
9QQB|1|A2|A|1665
9QQB|1|A2|G|1666
9QQB|1|A2|C|1667

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS14

Chain Ap

Small ribosomal subunit protein uS9

Chain As

40S ribosomal protein S19

Chain At

Small ribosomal subunit protein uS10