HL_9QQB_042
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 9QQB|1|B5|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQB_042 not in the Motif Atlas
- Geometric match to HL_3VJR_001
- Geometric discrepancy: 0.272
- The information below is about HL_3VJR_001
- Detailed Annotation
- T-loop with 2 bulged bases not stacked
- Broad Annotation
- T-loop with 2 bulged bases not stacked
- Motif group
- HL_13999.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9QQB|1|B5|U|204
9QQB|1|B5|C|205
9QQB|1|B5|U|206
9QQB|1|B5|G|207
9QQB|1|B5|A|208
9QQB|1|B5|U|209
9QQB|1|B5|C|210
9QQB|1|B5|G|211
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BY
- Ribosomal protein L26
- Chain Be
- Ribosomal protein L32
- Chain XA
- N-alpha-acetyltransferase 15, NatA auxiliary subunit
Coloring options: