HL_9QQB_046

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9QQB|1|B5|G|315, 9QQB|1|B5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_046 not in the Motif Atlas

Geometric match to HL_8CRE_009

Geometric discrepancy: 0.1691

The information below is about HL_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9QQB|1|B5|G|314
9QQB|1|B5|G|315
9QQB|1|B5|U|316
9QQB|1|B5|A|317
9QQB|1|B5|A|318
9QQB|1|B5|A|319
9QQB|1|B5|C|320
9QQB|1|B5|U|321
9QQB|1|B5|C|322
9QQB|1|B5|C|323

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bi

60S ribosomal protein L36

Chain Bo

Large ribosomal subunit protein eL42