HL_9QQB_059

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9QQB|1|B5|A|1585, 9QQB|1|B5|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_059 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.1261

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|G|1582
9QQB|1|B5|C|1583
9QQB|1|B5|G|1584
9QQB|1|B5|A|1585
9QQB|1|B5|A|1586
9QQB|1|B5|A|1587
9QQB|1|B5|G|1588
9QQB|1|B5|A|1589
9QQB|1|B5|C|1590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37