HL_9QQB_060

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9QQB|1|B5|C|1631, 9QQB|1|B5|C|1633, 9QQB|1|B5|A|1634

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_060 not in the Motif Atlas

Geometric match to HL_8CRE_021

Geometric discrepancy: 0.1462

The information below is about HL_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9QQB|1|B5|C|1630
9QQB|1|B5|C|1631
9QQB|1|B5|PSU|1632
9QQB|1|B5|C|1633
9QQB|1|B5|A|1634
9QQB|1|B5|G|1635

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29

Chain Bo

Large ribosomal subunit protein eL42