HL_9QQB_065

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9QQB|1|B5|A|1923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_065 not in the Motif Atlas

Geometric match to HL_8CRE_026

Geometric discrepancy: 0.269

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|C|1917
9QQB|1|B5|A|1918
9QQB|1|B5|U|1919
9QQB|1|B5|G|1920
9QQB|1|B5|G|1921
9QQB|1|B5|A|1922
9QQB|1|B5|A|1923
9QQB|1|B5|G|1924
9QQB|1|B5|U|1925
9QQB|1|B5|C|1926
9QQB|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12