HL_9QQB_074

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9QQB|1|B5|U|2373, 9QQB|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_074 not in the Motif Atlas

Geometric match to HL_8CRE_034

Geometric discrepancy: 0.1805

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|G|2366
9QQB|1|B5|U|2367
9QQB|1|B5|U|2368
9QQB|1|B5|C|2369
9QQB|1|B5|A|2370
9QQB|1|B5|G|2371
9QQB|1|B5|A|2372
9QQB|1|B5|U|2373
9QQB|1|B5|C|2374
9QQB|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BX

Large ribosomal subunit protein uL23

Chain Bg

60S ribosomal protein L34