HL_9QQB_091

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9QQB|1|B5|G|3941

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_091 not in the Motif Atlas

Geometric match to HL_4V9F_055

Geometric discrepancy: 0.1023

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9QQB|1|B5|C|3939
9QQB|1|B5|U|3940
9QQB|1|B5|G|3941
9QQB|1|B5|OMG|3942
9QQB|1|B5|G|3943
9QQB|1|B5|G|3944
9QQB|1|B5|C|3945
9QQB|1|B5|G|3946
9QQB|1|B5|G|3947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29