HL_9QQB_099

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9QQB|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_099 not in the Motif Atlas

Geometric match to HL_8P9A_173

Geometric discrepancy: 0.1285

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9QQB|1|B5|A|4220
9QQB|1|B5|G|4221
9QQB|1|B5|C|4222
9QQB|1|B5|A|4223
9QQB|1|B5|G|4224
9QQB|1|B5|A|4225
9QQB|1|B5|A|4226
9QQB|1|B5|U|4227

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein