HL_9QQB_106

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9QQB|1|B5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_106 not in the Motif Atlas

Geometric match to HL_8CRE_069

Geometric discrepancy: 0.1063

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9QQB|1|B5|G|4714
9QQB|1|B5|U|4715
9QQB|1|B5|A|4716
9QQB|1|B5|G|4717
9QQB|1|B5|A|4718
9QQB|1|B5|C|4719
9QQB|1|B5|G|4720
9QQB|1|B5|A|4721
9QQB|1|B5|C|4722

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22