HL_9QQB_107

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9QQB|1|B5|C|4763, 9QQB|1|B5|C|4764, 9QQB|1|B5|U|4765, 9QQB|1|B5|C|4766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_107 not in the Motif Atlas

Geometric match to HL_5J7L_149

Geometric discrepancy: 0.3323

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9QQB|1|B5|C|4760
9QQB|1|B5|U|4761
9QQB|1|B5|C|4762
9QQB|1|B5|C|4763
9QQB|1|B5|C|4764
9QQB|1|B5|U|4765
9QQB|1|B5|C|4766
9QQB|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BU

60S ribosomal protein L22