HL_9QQP_071
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQP_071 not in the Motif Atlas
- Geometric match to HL_8QYX_071
- Geometric discrepancy: 0.0607
- The information below is about HL_8QYX_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.2
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9QQP|1|B2|A|32
9QQP|1|B2|U|33
9QQP|1|B2|C|34
9QQP|1|B2|U|35
9QQP|1|B2|C|36
9QQP|1|B2|G|37
9QQP|1|B2|U|38
9QQP|1|B2|C|39
9QQP|1|B2|U|40
9QQP|1|B2|G|41
9QQP|1|B2|A|42
9QQP|1|B2|U|43
9QQP|1|B2|C|44
9QQP|1|B2|U|45
Current chains
- Chain B2
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E1
- Large ribosomal subunit protein uL5
- Chain G2
- Large ribosomal subunit protein uL18
Coloring options: