HL_9QQQ_050

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_050 not in the Motif Atlas

Geometric match to HL_8B0X_051

Geometric discrepancy: 0.0627

The information below is about HL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9QQQ|1|a|U|641
9QQQ|1|a|U|642
9QQQ|1|a|A|643
9QQQ|1|a|A|644
9QQQ|1|a|C|645
9QQQ|1|a|U|646
9QQQ|1|a|G|647

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35