HL_9QSA_071

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUCUCGUCUGAUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSA_071 not in the Motif Atlas

Geometric match to HL_9AXU_068

Geometric discrepancy: 0.1154

The information below is about HL_9AXU_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01182.2

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

4

Unit IDs

9QSA|1|B2|A|32
9QSA|1|B2|U|33
9QSA|1|B2|C|34
9QSA|1|B2|U|35
9QSA|1|B2|C|36
9QSA|1|B2|G|37
9QSA|1|B2|U|38
9QSA|1|B2|C|39
9QSA|1|B2|U|40
9QSA|1|B2|G|41
9QSA|1|B2|A|42
9QSA|1|B2|U|43
9QSA|1|B2|C|44
9QSA|1|B2|U|45

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain E1

Large ribosomal subunit protein uL5

Chain G2

Large ribosomal subunit protein uL18