HL_9R3A_025

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGAUAAAC

Length

9 nucleotides

Bulged bases

9R3A|1|A|U|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R3A_025 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3273

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9R3A|1|A|G|1138
9R3A|1|A|U|1139
9R3A|1|A|G|1140
9R3A|1|A|A|1141
9R3A|1|A|U|1142
9R3A|1|A|A|1143
9R3A|1|A|A|1144
9R3A|1|A|A|1145
9R3A|1|A|C|1146

Current chains

Chain A

16S rRNA

Nearby chains

Chain U

Small ribosomal subunit protein bS21

Chain V

Small ribosomal subunit protein uS2