HL_9R3A_044

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9R3A|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R3A_044 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1369

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9R3A|1|a|C|305
9R3A|1|a|U|306
9R3A|1|a|G|307
9R3A|1|a|G|308
9R3A|1|a|A|309
9R3A|1|a|A|310
9R3A|1|a|A|311
9R3A|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24